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BMC Biol
| Title: | "The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest" |
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| Author(s): | Rispe C; Legeai F; Nabity PD; Fernandez R; Arora AK; Baa-Puyoulet P; Banfill CR; Bao L; Barbera M; Bouallegue M; Bretaudeau A; Brisson JA; Calevro F; Capy P; Catrice O; Chertemps T; Couture C; Deliere L; Douglas AE; Dufault-Thompson K; Escuer P; Feng H; Forneck A; Gabaldon T; Guigo R; Hilliou F; Hinojosa-Alvarez S; Hsiao YM; Hudaverdian S; Jacquin-Joly E; James EB; Johnston S; Joubard B; Le Goff G; Le Trionnaire G; Librado P; Liu S; Lombaert E; Lu HL; Maibeche M; Makni M; Marcet-Houben M; Martinez-Torres D; Meslin C; Montagne N; Moran NA; Papura D; Parisot N; Rahbe Y; Lopes MR; Ripoll-Cladellas A; Robin S; Roques C; Roux P; Rozas J; Sanchez-Gracia A; Sanchez-Herrero JF; Santesmasses D; Scatoni I; Serre RF; Tang M; Tian W; Umina PA; van Munster M; Vincent-Monegat C; Wemmer J; Wilson ACC; Zhang Y; Zhao C; Zhao J; Zhao S; Zhou X; Delmotte F; Tagu D; |
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| Address: | "BIOEPAR, INRAE, Oniris, Nantes, France. claude.rispe@inrae.fr. BIPAA, IGEPP, Agrocampus Ouest, INRAE, Universite de Rennes 1, 35650, Le Rheu, France. fabrice.legeai@inrae.fr. Department of Botany and Plant Sciences, University of California, Riverside, USA. Bioinformatics and Genomics Unit, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology, Dr. Aiguader, 88, 08003, Barcelona, Spain. Present address: Institute of Evolutionary Biology (CSIC-UPF), Passeig maritim de la Barceloneta 37-49, 08003, Barcelona, Spain. Department of Entomology, Cornell University, Ithaca, NY, 14853, USA. Univ Lyon, INSA-Lyon, INRAE, BF2I, UMR0203, F-69621, Villeurbanne, France. Department of Biology, University of Miami, Coral Gables, FL, 33146, USA. Facultad de Agronomia, Montevideo, Uruguay. Institut de Biologia Integrativa de Sistemes, Parc Cientific Universitat de Valencia, C/ Catedratico Jose Beltran n degrees 2, 46980, Paterna, Valencia, Spain. Universite de Tunis El Manar, Faculte des Sciences de Tunis, LR01ES05 Biochimie et Biotechnologie, 2092, Tunis, Tunisia. BIPAA, IGEPP, Agrocampus Ouest, INRAE, Universite de Rennes 1, 35650, Le Rheu, France. Department Biol, Univ Rochester, Rochester, NY, 14627, USA. Laboratoire Evolution, Genomes, Comportement, Ecologie CNRS, Univ. Paris-Sud, IRD, Universite Paris-Saclay, Gif-sur-Yvette, France. LIPM, Universite de Toulouse, INRAE, CNRS, Castanet-Tolosan, France. Sorbonne Universite, UPEC, Universite Paris 7, INRAE, CNRS, IRD, Institute of Ecology and Environmental Sciences, Paris, France. SAVE, INRAE, Bordeaux Sciences Agro, Villenave d'Ornon, France. Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY, 14853, USA. Department of Cell and Molecular Biology, College of the Environment and Life Sciences, University of Rhode Island, Kingston, RI, USA. Departament de Genetica, Microbiologia i Estadistica and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, 08028, Barcelona, Spain. Department of Biology, University of Miami, Coral Gables, USA. Current affiliation: Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, USA. Universitat fur Bodenkultur (BOKU), Vienna, Austria. Universitat Pompeu Fabra, 08003, Barcelona, Spain. Institucio Catalana de Recerca i Estudis Avancats (ICREA), Pg. Lluis Companys 23, 08010, Barcelona, Spain. Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain. Universitat Pompeu Fabra (UPF), Barcelona, Spain. Universite Cote d'Azur, INRAE, CNRS, Institut Sophia Agrobiotech, Sophia-Antipolis, France. Institute of Biotechnology and Department of Entomology, College of Bioresources and Agriculture, National Taiwan University, Taipei, Taiwan. Present affiliation: Bone and Joint Research Center, Chang Gung Memorial Hospital, Taoyuan, Taiwan. IGEPP, Agrocampus Ouest, INRAE, Universite de Rennes 1, 35650, Le Rheu, France. INRAE, Institute of Ecology and Environmental Sciences, Versailles, France. Department of Entomology, Texas A&M University, College Station, TX, 77843, USA. Laboratoire d'Anthropobiologie Moleculaire et d'Imagerie de Synthese, CNRS UMR 5288, Universite de Toulouse, Universite Paul Sabatier, Toulouse, France. China National GeneBank-Shenzhen, BGI-Shenzhen, Shenzhen, 518083, Guangdong Province, People's Republic of China. BGI-Shenzhen, Shenzhen, 518083, Guangdong Province, People's Republic of China. Department of Entomology, College of Plant Protection, China Agricultural University, Beijing, 100193, People's Republic of China. Universite Cote d'Azur, INRAE, CNRS, ISA, Sophia Antipolis, France. Department of Post-Modern Agriculture, MingDao University, Changhua, Taiwan. Sorbonne Universite, Institute of Ecology and Environmental Sciences, Paris, France. Department of Integrative Biology, University of Texas at Austin, Austin, USA. Univ Lyon, INRAE, INSA-Lyon, CNRS, UCBL, UMR5240 MAP, F-69622, Villeurbanne, France. BIPAA IGEPP, Agrocampus Ouest, INRAE, Universite de Rennes 1, 35650, Le Rheu, France. Plateforme Genomique GeT-PlaGe, Centre INRAE de Toulouse Midi-Pyrenees, 24 Chemin de Borde Rouge, Auzeville, CS 52627, 31326, Castanet-Tolosan Cedex, France. Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, 02115, USA. Facultad de Agronoia, Montevideo, Uruguay. School of BioSciences, The University of Melbourne, Parkville, VIC, Australia. BGPI, Universite Montpellier, CIRAD, INRAE, Montpellier SupAgro, Montpellier, France. SAVE, INRAE, Bordeaux Sciences Agro, Villenave d'Ornon, France. francois.delmotte@inrae.fr. IGEPP, Agrocampus Ouest, INRAE, Universite de Rennes 1, 35650, Le Rheu, France. denis.tagu@inrae.fr" |
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| Journal Title: | BMC Biol |
| Year: | 2020 |
| Volume: | 20200723 |
| Issue: | 1 |
| Page Number: | 90 - |
| DOI: | 10.1186/s12915-020-00820-5 |
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| ISSN/ISBN: | 1741-7007 (Electronic) 1741-7007 (Linking) |
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| Abstract: | "BACKGROUND: Although native to North America, the invasion of the aphid-like grape phylloxera Daktulosphaira vitifoliae across the globe altered the course of grape cultivation. For the past 150 years, viticulture relied on grafting-resistant North American Vitis species as rootstocks, thereby limiting genetic stocks tolerant to other stressors such as pathogens and climate change. Limited understanding of the insect genetics resulted in successive outbreaks across the globe when rootstocks failed. Here we report the 294-Mb genome of D. vitifoliae as a basic tool to understand host plant manipulation, nutritional endosymbiosis, and enhance global viticulture. RESULTS: Using a combination of genome, RNA, and population resequencing, we found grape phylloxera showed high duplication rates since its common ancestor with aphids, but similarity in most metabolic genes, despite lacking obligate nutritional symbioses and feeding from parenchyma. Similarly, no enrichment occurred in development genes in relation to viviparity. However, phylloxera evolved > 2700 unique genes that resemble putative effectors and are active during feeding. Population sequencing revealed the global invasion began from the upper Mississippi River in North America, spread to Europe and from there to the rest of the world. CONCLUSIONS: The grape phylloxera genome reveals genetic architecture relative to the evolution of nutritional endosymbiosis, viviparity, and herbivory. The extraordinary expansion in effector genes also suggests novel adaptations to plant feeding and how insects induce complex plant phenotypes, for instance galls. Finally, our understanding of the origin of this invasive species and its genome provide genetics resources to alleviate rootstock bottlenecks restricting the advancement of viticulture" |
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| Keywords: | "*Adaptation, Biological/genetics Animal Distribution Animals *Biological Evolution Genome, Insect/*physiology Hemiptera/*genetics Introduced Species Vitis Arthropod genomes Biological invasions Daktulosphaira vitifoliae Effectors Gene duplications Host pl;" |
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| Notes: | "MedlineRispe, Claude Legeai, Fabrice Nabity, Paul D Fernandez, Rosa Arora, Arinder K Baa-Puyoulet, Patrice Banfill, Celeste R Bao, Leticia Barbera, Miquel Bouallegue, Maryem Bretaudeau, Anthony Brisson, Jennifer A Calevro, Federica Capy, Pierre Catrice, Olivier Chertemps, Thomas Couture, Carole Deliere, Laurent Douglas, Angela E Dufault-Thompson, Keith Escuer, Paula Feng, Honglin Forneck, Astrid Gabaldon, Toni Guigo, Roderic Hilliou, Frederique Hinojosa-Alvarez, Silvia Hsiao, Yi-Min Hudaverdian, Sylvie Jacquin-Joly, Emmanuelle James, Edward B Johnston, Spencer Joubard, Benjamin Le Goff, Gaelle Le Trionnaire, Gael Librado, Pablo Liu, Shanlin Lombaert, Eric Lu, Hsiao-Ling Maibeche, Martine Makni, Mohamed Marcet-Houben, Marina Martinez-Torres, David Meslin, Camille Montagne, Nicolas Moran, Nancy A Papura, Daciana Parisot, Nicolas Rahbe, Yvan Lopes, Melanie Ribeiro Ripoll-Cladellas, Aida Robin, Stephanie Roques, Celine Roux, Pascale Rozas, Julio Sanchez-Gracia, Alejandro Sanchez-Herrero, Jose F Santesmasses, Didac Scatoni, Iris Serre, Remy-Felix Tang, Ming Tian, Wenhua Umina, Paul A van Munster, Manuella Vincent-Monegat, Carole Wemmer, Joshua Wilson, Alex C C Zhang, Ying Zhao, Chaoyang Zhao, Jing Zhao, Serena Zhou, Xin Delmotte, Francois Tagu, Denis eng 764840/H2020 Marie Sklodowska-Curie Actions/International 747607/H2020 Marie Sklodowska-Curie Actions/International 12216941/US National Institute for Food and Agriculture/International IJCI-2015-26627/Doctorate Fellowship Foundation of Nanjing Forestry University (CN)/International Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S. England 2020/07/24 BMC Biol. 2020 Jul 23; 18(1):90. doi: 10.1186/s12915-020-00820-5" |
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