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Nat Commun
| Title: | A chromosome-level genome assembly of Cydia pomonella provides insights into chemical ecology and insecticide resistance |
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| Author(s): | Wan F; Yin C; Tang R; Chen M; Wu Q; Huang C; Qian W; Rota-Stabelli O; Yang N; Wang S; Wang G; Zhang G; Guo J; Gu LA; Chen L; Xing L; Xi Y; Liu F; Lin K; Guo M; Liu W; He K; Tian R; Jacquin-Joly E; Franck P; Siegwart M; Ometto L; Anfora G; Blaxter M; Meslin C; Nguyen P; Dalikova M; Marec F; Olivares J; Maugin S; Shen J; Liu J; Guo J; Luo J; Liu B; Fan W; Feng L; Zhao X; Peng X; Wang K; Liu L; Zhan H; Liu W; Shi G; Jiang C; Jin J; Xian X; Lu S; Ye M; Li M; Yang M; Xiong R; Walters JR; Li F; |
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| Address: | "State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China. wanfanghao@caas.cn. Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China. wanfanghao@caas.cn. Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insect Pests, Institute of Insect Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China. MARA-CABI Joint Laboratory for Bio-safety, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China. State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, 100101, China. Northwest A&F University, State Key Laboratory of Crop Stress Biology for Arid Areas, Key Laboratory of Integrated Pest Management on Crops in Northwestern Loess Plateau of Ministry of Agriculture, Yangling, 712100, China. State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China. College of Plant Protection, Hunan Agricultural University, Changsha, 410128, China. Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China. Department of Sustainable Agro-ecosystems and Bioresources, IASMA Research and Innovation Centre, Fondazione Edmund Mach, Via Mach 1, 38010, San Michele all'Adige (TN), Italy. State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China. yangnianwan@caas.cn. Technical Centre for Animal Plant and Food Inspection and Quarantine, Shanghai Custom, Shanghai, 200135, China. Ecology and Evolutionary Biology, University of Kansas, Lawrence, KS, 66046, USA. INRA, Institute of Ecology and Environmental Sciences of Paris, 78000, Versailles, France. INRA, Plantes et Systemes de culture Horticole, 228 route de l'Aerodrome, 84914, Avignon Cedex 09, France. Department of Biology and Biotechnology, University of Pavia, 27100, Pavia, Italy. Centre Agriculture Food Environment (C3A), University of Trento, 38010, San Michele all'Adige (TN), Italy. Edinburgh Genomics, and Institute of Evolutionary Biology, School of Biological Sciences, The King's Buildings, The University of Edinburgh, Edinburgh, EH9 3JT, UK. Biology Centre of the Czech Academy of Sciences, Institute of Entomology, Branisovska 31, 37005, Ceske Budejovice, Czech Republic. Faculty of Science, University of South Bohemia, Branisovska 1760, 37005, Ceske Budejovice, Czech Republic. College of Plant Protection, Nanjing Agricultural University, Nanjing, 210095, China. Institute of Plant Protection, Xinjiang Academy of Agricultural and Reclamation Sciences, Shihezi, 832000, China. College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao, 266109, China. College of Biological and Environmental Engineering, Zhejiang Shuren University, Hangzhou, 310015, China. Xinjiang Production & Construction Corps Key Laboratory of Integrated Pest Management on Agriculture in South Xinjiang, Tarim University, Alar, 843300, China. Ecology and Evolutionary Biology, University of Kansas, Lawrence, KS, 66046, USA. jrwalters@ku.edu. Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insect Pests, Institute of Insect Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China. lifei18@zju.edu.cn" |
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| Journal Title: | Nat Commun |
| Year: | 2019 |
| Volume: | 20190917 |
| Issue: | 1 |
| Page Number: | 4237 - |
| DOI: | 10.1038/s41467-019-12175-9 |
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| ISSN/ISBN: | 2041-1723 (Electronic) 2041-1723 (Linking) |
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| Abstract: | "The codling moth Cydia pomonella, a major invasive pest of pome fruit, has spread around the globe in the last half century. We generated a chromosome-level scaffold assembly including the Z chromosome and a portion of the W chromosome. This assembly reveals the duplication of an olfactory receptor gene (OR3), which we demonstrate enhances the ability of C. pomonella to exploit kairomones and pheromones in locating both host plants and mates. Genome-wide association studies contrasting insecticide-resistant and susceptible strains identify hundreds of single nucleotide polymorphisms (SNPs) potentially associated with insecticide resistance, including three SNPs found in the promoter of CYP6B2. RNAi knockdown of CYP6B2 increases C. pomonella sensitivity to two insecticides, deltamethrin and azinphos methyl. The high-quality genome assembly of C. pomonella informs the genetic basis of its invasiveness, suggesting the codling moth has distinctive capabilities and adaptive potential that may explain its worldwide expansion" |
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| Keywords: | "Animals Chromosomes, Insect/*genetics Gene Duplication Genome, Insect Insect Proteins/genetics/metabolism *Insecticide Resistance Insecticides/*pharmacology Moths/*drug effects/*genetics/metabolism Pheromones/metabolism Polymorphism, Single Nucleotide Pro;" |
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| Notes: | "MedlineWan, Fanghao Yin, Chuanlin Tang, Rui Chen, Maohua Wu, Qiang Huang, Cong Qian, Wanqiang Rota-Stabelli, Omar Yang, Nianwan Wang, Shuping Wang, Guirong Zhang, Guifen Guo, Jianyang Gu, Liuqi Aloy Chen, Longfei Xing, Longsheng Xi, Yu Liu, Feiling Lin, Kejian Guo, Mengbo Liu, Wei He, Kang Tian, Ruizheng Jacquin-Joly, Emmanuelle Franck, Pierre Siegwart, Myriam Ometto, Lino Anfora, Gianfranco Blaxter, Mark Meslin, Camille Nguyen, Petr Dalikova, Martina Marec, Frantisek Olivares, Jerome Maugin, Sandrine Shen, Jianru Liu, Jinding Guo, Jinmeng Luo, Jiapeng Liu, Bo Fan, Wei Feng, Likai Zhao, Xianxin Peng, Xiong Wang, Kang Liu, Lang Zhan, Haixia Liu, Wanxue Shi, Guoliang Jiang, Chunyan Jin, Jisu Xian, Xiaoqing Lu, Sha Ye, Mingli Li, Meizhen Yang, Minglu Xiong, Renci Walters, James R Li, Fei eng MR/K001744/1/MRC_/Medical Research Council/United Kingdom Research Support, Non-U.S. Gov't England 2019/09/19 Nat Commun. 2019 Sep 17; 10(1):4237. doi: 10.1038/s41467-019-12175-9" |
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